-As Yaya put it, so now Soundwave is a triple-changer, able to change from Straxus to a chair to Soundwave?!?
-One minute, Grapple and Inferno are aboard a ship, trying to douse the flames and regain control... next panel, they are on a street and said ship falls on their heads!!! WTF?!
-Speaking of killing off characters, so now Motormaster is dead? Thanks to Holmes we'll never see Menasor now?
-I didn't understand a thing from what happened during Ratbat's speech. Is that Blades? Some weird animal grabs him and he explodes? WTF?!
-So, Megatron gets his fusion cannon and mace, and he doesn't even uses them agains SP? Gah.
-Speaking of whom, he seemed pretty dead to me. How do they try to correct that in the TPB, give him a speech bubble saying "I'm not dead yet, Jim?"

Overall - keep Holmes away from writing TF stories. If IDW wants to someone else then Simon to give a try, heck, hire a professional comic writer and have Simon explain the story/characters to them. I'd love to see Paul Dini write a TF comic. He has a knack for doing character-centered stories, especially for villains (read his latest work in Detective Comics).
Sometimes I really, really want to comment on the IDW board. Thank Primus I forgot my password, I'm sure Holmes would comment on what I'd write there. 'Goodchild'... Heh.